The denominator in Equation 1,P(D), represents the likelihood of the data, and is calculated using standard methodology[62], and the numerator is calculated in a manner similar to that described previously (e
The denominator in Equation 1,P(D), represents the likelihood of the data, and is calculated using standard methodology[62], and the numerator is calculated in a manner similar to that described previously (e.g.,[7],[64],[65]). or not site-specific functional shifts characterize the evolution of a protein and, if so, points to the specific sites and lineages in which these…